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DRX021917: 454 GS Junior sequencing of SAMD00020918
1 LS454 (454 GS Junior) run: 60,072 spots, 32.2M bases, 71.6Mb downloads

Submitted by: Hokkaido University, Research Center for Zoonosis Control (HU-RCZC)
Study: Whole genome analysis of Thogoto virus isolated in Japan
show Abstracthide Abstract
Ticks transmit viruses responsible for severe emerging and re-emerging infectious diseases, and some of them have a significant impact on public health. In Japan, only little has been known about the distribution of tick-borne viruses. In this study, we collected and tested ticks to investigate the distribution of tick-borne arboviruses in Kyoto, Japan, and first isolated Thogoto virus (THOV) in the Far-Eastern Asia. The Japanese isolate was genetically distinct from the cluster of the other isolates from Africa, Europe and Middle Eastern. Various cell lines derived from mammal and tick showed susceptibility to the isolate, but the isolate showed no pathogenicity in mice model. These information will contribute to understand the distribution and ecology of THOV.
Sample: Thogotovirus isolated from Haemaphysalis longicornis in Kyoto
SAMD00020918 • DRS019629 • All experiments • All runs
Library:
Instrument: 454 GS Junior
Strategy: WGS
Source: GENOMIC
Selection: cDNA
Layout: SINGLE
Construction protocol:
Spot descriptor:
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Runs: 1 run, 60,072 spots, 32.2M bases, 71.6Mb
Run# of Spots# of BasesSizePublished
DRR02416760,07232.2M71.6Mb2015-05-08

ID:
1481954

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